IL_4V8E_268

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4V8E|1|CA|G|2251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_268 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0534

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V8E|1|CA|C|2104
4V8E|1|CA|A|2105
4V8E|1|CA|G|2106
*
4V8E|1|CA|C|2249
4V8E|1|CA|G|2250
4V8E|1|CA|G|2251
4V8E|1|CA|G|2252

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CD

50S ribosomal protein L2

Chain CZ

50S ribosomal protein L28