IL_4V8E_286

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V8E|1|CA|A|2585, 4V8E|1|CA|C|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_286 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.0984

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|C|2525
4V8E|1|CA|G|2526
*
4V8E|1|CA|C|2584
4V8E|1|CA|A|2585
4V8E|1|CA|C|2586
4V8E|1|CA|G|2587

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CM

50S ribosomal protein L13

Chain DB

TRNA-TYR