IL_4V8E_287

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V8E|1|CA|A|2555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_287 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0893

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V8E|1|CA|U|2535
4V8E|1|CA|G|2536
*
4V8E|1|CA|C|2553
4V8E|1|CA|A|2554
4V8E|1|CA|A|2555
4V8E|1|CA|G|2556

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CM

50S ribosomal protein L13