IL_4V8E_289

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V8E|1|CA|G|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_289 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1138

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8E|1|CA|U|2649
4V8E|1|CA|U|2650
4V8E|1|CA|G|2651
4V8E|1|CA|A|2652
4V8E|1|CA|G|2653
*
4V8E|1|CA|C|2788
4V8E|1|CA|A|2789
4V8E|1|CA|A|2790
4V8E|1|CA|G|2791
4V8E|1|CA|A|2792
4V8E|1|CA|U|2793
4V8E|1|CA|G|2794
4V8E|1|CA|A|2795
4V8E|1|CA|G|2796

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CM

50S ribosomal protein L13