IL_4V8E_299

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_299 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1157

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|U|2858
4V8E|1|CA|G|2859
4V8E|1|CA|U|2860
4V8E|1|CA|A|2861
4V8E|1|CA|A|2862
4V8E|1|CA|G|2863
*
4V8E|1|CA|U|2876
4V8E|1|CA|U|2877
4V8E|1|CA|G|2878
4V8E|1|CA|A|2879
4V8E|1|CA|G|2880

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain CR

50S ribosomal protein L19