IL_4V8E_303
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8E_303 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.0926
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8E|1|CB|U|36
4V8E|1|CB|U|37
4V8E|1|CB|C|38
4V8E|1|CB|C|39
4V8E|1|CB|C|40
*
4V8E|1|CB|G|46
4V8E|1|CB|A|47
4V8E|1|CB|A|48
4V8E|1|CB|C|49
4V8E|1|CB|A|50
Current chains
- Chain CB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain C4
- 50S ribosomal protein L31
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CG
- 50S ribosomal protein L5
- Chain CQ
- 50S ribosomal protein L18
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