IL_4V8E_305

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_305 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2751

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8E|1|CB|U|82
4V8E|1|CB|G|83
4V8E|1|CB|G|84
*
4V8E|1|CB|C|97
4V8E|1|CB|U|98
4V8E|1|CB|G|99

Current chains

Chain CB

5S RIBOSOMAL RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CP

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25

Chain CX

50S ribosomal protein L30