IL_4V8E_312

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4V8E|1|DA|G|129|||A, 4V8E|1|DA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_312 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1115

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4V8E|1|DA|U|129
4V8E|1|DA|G|129|||A
4V8E|1|DA|A|130
4V8E|1|DA|C|131
*
4V8E|1|DA|G|231
4V8E|1|DA|G|232

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DS

30S RIBOSOMAL PROTEIN S16

Chain DT

30S RIBOSOMAL PROTEIN S17

Chain DW

30S RIBOSOMAL PROTEIN S20