IL_4V8E_337

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V8E|1|DA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_337 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1117

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V8E|1|DA|G|683
4V8E|1|DA|A|684
4V8E|1|DA|G|685
4V8E|1|DA|U|686
4V8E|1|DA|A|687
4V8E|1|DA|G|688
*
4V8E|1|DA|C|699
4V8E|1|DA|G|700
4V8E|1|DA|C|701
4V8E|1|DA|A|702
4V8E|1|DA|G|703
4V8E|1|DA|A|704
4V8E|1|DA|U|705
4V8E|1|DA|A|706
4V8E|1|DA|C|707

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DN

30S RIBOSOMAL PROTEIN S11