IL_4V8E_340
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8E_340 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0882
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4V8E|1|DA|G|887
4V8E|1|DA|G|888
4V8E|1|DA|A|889
4V8E|1|DA|G|890
4V8E|1|DA|U|891
4V8E|1|DA|A|892
4V8E|1|DA|C|893
4V8E|1|DA|G|894
*
4V8E|1|DA|U|905
4V8E|1|DA|G|906
4V8E|1|DA|A|907
4V8E|1|DA|A|908
4V8E|1|DA|A|909
4V8E|1|DA|C|910
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DO
- 30S RIBOSOMAL PROTEIN S12
- Chain DT
- 30S RIBOSOMAL PROTEIN S17
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