3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_141 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.088
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V8F|1|BA|U|580
4V8F|1|BA|G|581
4V8F|1|BA|U|582
4V8F|1|BA|A|583
4V8F|1|BA|G|584
*
4V8F|1|BA|U|757
4V8F|1|BA|G|758
4V8F|1|BA|A|759
4V8F|1|BA|G|760
4V8F|1|BA|G|761

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain BK
30S RIBOSOMAL PROTEIN S8
Chain BO
30S RIBOSOMAL PROTEIN S12
Chain BR
30S RIBOSOMAL PROTEIN S15
Chain BT
30S RIBOSOMAL PROTEIN S17

Coloring options:


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