IL_4V8F_201

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V8F|1|CA|U|244, 4V8F|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_201 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0942

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V8F|1|CA|C|242
4V8F|1|CA|A|243
4V8F|1|CA|U|244
4V8F|1|CA|C|245
4V8F|1|CA|A|246
4V8F|1|CA|G|247
*
4V8F|1|CA|C|277
4V8F|1|CA|G|278
4V8F|1|CA|A|279
4V8F|1|CA|C|280
4V8F|1|CA|G|281
4V8F|1|CA|A|282
4V8F|1|CA|C|283
4V8F|1|CA|G|284

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S RIBOSOMAL PROTEIN S12

Chain CT

30S RIBOSOMAL PROTEIN S17