IL_4V8F_212
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V8F|1|CA|A|532, 4V8F|1|CA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_212 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.161
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8F|1|CA|G|515
4V8F|1|CA|U|516
4V8F|1|CA|G|517
4V8F|1|CA|C|518
4V8F|1|CA|C|519
4V8F|1|CA|A|520
4V8F|1|CA|G|521
*
4V8F|1|CA|C|528
4V8F|1|CA|G|529
4V8F|1|CA|G|530
4V8F|1|CA|U|531
4V8F|1|CA|A|532
4V8F|1|CA|A|533
4V8F|1|CA|U|534
4V8F|1|CA|A|535
4V8F|1|CA|C|536
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain C1
- MRNA
- Chain CB
- TRNA-TYR
- Chain CF
- 30S RIBOSOMAL PROTEIN S3
- Chain CG
- 30S RIBOSOMAL PROTEIN S4
- Chain CO
- 30S RIBOSOMAL PROTEIN S12
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