IL_4V8F_338

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V8F|1|DA|A|1938, 4V8F|1|DA|U|1944, 4V8F|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_338 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1212

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V8F|1|DA|C|1934
4V8F|1|DA|G|1935
4V8F|1|DA|A|1936
4V8F|1|DA|A|1937
4V8F|1|DA|A|1938
4V8F|1|DA|U|1939
4V8F|1|DA|U|1940
4V8F|1|DA|C|1941
4V8F|1|DA|C|1942
4V8F|1|DA|U|1943
4V8F|1|DA|U|1944
4V8F|1|DA|G|1945
*
4V8F|1|DA|C|1961
4V8F|1|DA|C|1962
4V8F|1|DA|U|1963
4V8F|1|DA|G|1964

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CB

TRNA-TYR

Chain DD

50S ribosomal protein L2