IL_4V8F_345
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUG*CUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_345 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2902
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V8F|1|DA|C|2107
4V8F|1|DA|C|2108
4V8F|1|DA|U|2109
4V8F|1|DA|G|2110
*
4V8F|1|DA|C|2179
4V8F|1|DA|U|2180
4V8F|1|DA|G|2181
4V8F|1|DA|G|2182
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain CD
- TRNA-TYR
Coloring options: