3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCUG*CUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_345 not in the Motif Atlas
Geometric match to IL_1JID_002
Geometric discrepancy: 0.2902
The information below is about IL_1JID_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

4V8F|1|DA|C|2107
4V8F|1|DA|C|2108
4V8F|1|DA|U|2109
4V8F|1|DA|G|2110
*
4V8F|1|DA|C|2179
4V8F|1|DA|U|2180
4V8F|1|DA|G|2181
4V8F|1|DA|G|2182

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain CD
TRNA-TYR

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3646 s