IL_4V8F_345

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_345 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2902

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8F|1|DA|C|2107
4V8F|1|DA|C|2108
4V8F|1|DA|U|2109
4V8F|1|DA|G|2110
*
4V8F|1|DA|C|2179
4V8F|1|DA|U|2180
4V8F|1|DA|G|2181
4V8F|1|DA|G|2182

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CD

TRNA-TYR