IL_4V8G_046

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

4V8G|1|AA|U|1049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8G_046 not in the Motif Atlas

Geometric match to IL_8C3A_452

Geometric discrepancy: 0.3149

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4V8G|1|AA|G|1047
4V8G|1|AA|G|1048
4V8G|1|AA|U|1049
4V8G|1|AA|G|1050
*
4V8G|1|AA|C|1208
4V8G|1|AA|C|1209
4V8G|1|AA|C|1210

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AN

30S Ribosomal Protein S14