IL_8C3A_452

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8C3A|1|CM|G|1198
8C3A|1|CM|U|1199
8C3A|1|CM|C|1200
*
8C3A|1|CM|G|1434
8C3A|1|CM|U|1435
8C3A|1|CM|U|1436

Current chains

Chain CM

18S

Nearby chains

Chain CX

40S ribosomal protein S10-A

Chain DC

40S ribosomal protein S15

Chain DQ

40S ribosomal protein S29A

Chain DS

Ubiquitin-40S ribosomal protein S31 fusion protein