IL_4V8H_029

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_029 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2714

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V8H|1|AA|C|656
4V8H|1|AA|G|657
4V8H|1|AA|G|658
*
4V8H|1|AA|C|747
4V8H|1|AA|C|748
4V8H|1|AA|C|749
4V8H|1|AA|G|750

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AO

30S Ribosomal Protein S15