IL_4V8H_219
3D structure
- PDB id
- 4V8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of HPF bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAUG*CGUGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8H_219 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.3166
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V8H|1|CA|G|947
4V8H|1|CA|C|948
4V8H|1|CA|A|949
4V8H|1|CA|U|950
4V8H|1|CA|G|951
*
4V8H|1|CA|C|1230
4V8H|1|CA|G|1231
4V8H|1|CA|U|1232
4V8H|1|CA|G|1233
4V8H|1|CA|C|1234
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CI
- 30S Ribosomal Protein S9
- Chain CM
- 30S Ribosomal Protein S13
- Chain CU
- 30S Ribosomal Protein THX
- Chain CX
- Probable sigma(54) modulation protein
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