3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
ACU*GGU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8H_230 not in the Motif Atlas
Geometric match to IL_4Y1M_005
Geometric discrepancy: 0.1579
The information below is about IL_4Y1M_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V8H|1|CA|A|1245
4V8H|1|CA|C|1246
4V8H|1|CA|U|1247
*
4V8H|1|CA|G|1290
4V8H|1|CA|G|1291
4V8H|1|CA|U|1292

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CG
30S Ribosomal Protein S7
Chain CI
30S Ribosomal Protein S9
Chain CU
30S Ribosomal Protein THX

Coloring options:


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