IL_4V8H_230

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACU*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8H_230 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1579

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8H|1|CA|A|1245
4V8H|1|CA|C|1246
4V8H|1|CA|U|1247
*
4V8H|1|CA|G|1290
4V8H|1|CA|G|1291
4V8H|1|CA|U|1292

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CI

30S Ribosomal Protein S9

Chain CU

30S Ribosomal Protein THX