IL_4V8J_146

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_146 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2247

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8J|1|BA|C|2097
4V8J|1|BA|U|2098
4V8J|1|BA|U|2099
4V8J|1|BA|G|2100
*
4V8J|1|BA|U|2189
4V8J|1|BA|G|2190
4V8J|1|BA|G|2191
4V8J|1|BA|G|2192

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11