IL_4V8J_174

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_174 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1135

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8J|1|BA|U|2847
4V8J|1|BA|G|2848
4V8J|1|BA|U|2849
4V8J|1|BA|A|2850
4V8J|1|BA|A|2851
4V8J|1|BA|G|2852
*
4V8J|1|BA|U|2865
4V8J|1|BA|U|2866
4V8J|1|BA|G|2867
4V8J|1|BA|A|2868
4V8J|1|BA|G|2869

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19