IL_4V8J_189

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V8J|1|CA|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_189 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1517

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8J|1|CA|G|142
4V8J|1|CA|A|143
4V8J|1|CA|C|144
4V8J|1|CA|A|145
4V8J|1|CA|A|146
4V8J|1|CA|C|147
*
4V8J|1|CA|G|162
4V8J|1|CA|C|163
4V8J|1|CA|U|164
4V8J|1|CA|A|165
4V8J|1|CA|A|166
4V8J|1|CA|U|167
4V8J|1|CA|C|168

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20