IL_4V8J_215

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V8J|1|CA|C|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_215 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1212

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8J|1|CA|G|910
4V8J|1|CA|C|911
4V8J|1|CA|A|912
*
4V8J|1|CA|U|1362
4V8J|1|CA|U|1363
4V8J|1|CA|C|1364
4V8J|1|CA|C|1365
4V8J|1|CA|C|1366

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA

Chain CX

messenger RNA