IL_4V8J_221

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V8J|1|CA|C|1181, 4V8J|1|CA|A|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_221 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1193

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V8J|1|CA|G|1039
4V8J|1|CA|G|1040
*
4V8J|1|CA|U|1180
4V8J|1|CA|C|1181
4V8J|1|CA|A|1182
4V8J|1|CA|G|1183
4V8J|1|CA|C|1184

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14

Chain CY

Transfer RNA; tRNA