IL_4V8J_224

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUU*AACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGUU,AACG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_224 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1988

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8J|1|CA|C|1101
4V8J|1|CA|G|1102
4V8J|1|CA|U|1103
4V8J|1|CA|U|1104
*
4V8J|1|CA|A|1133
4V8J|1|CA|A|1134
4V8J|1|CA|C|1135
4V8J|1|CA|G|1136

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10