IL_4V8J_227

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V8J|1|CA|U|1238, 4V8J|1|CA|U|1259, 4V8J|1|CA|A|1261, 4V8J|1|CA|U|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_227 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.3106

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8J|1|CA|G|1236
4V8J|1|CA|A|1237
4V8J|1|CA|U|1238
4V8J|1|CA|G|1239
*
4V8J|1|CA|C|1258
4V8J|1|CA|U|1259
4V8J|1|CA|A|1260
4V8J|1|CA|A|1261
4V8J|1|CA|U|1262
4V8J|1|CA|C|1263

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14