IL_4V8J_229

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_229 not in the Motif Atlas

Geometric match to IL_5AY2_003

Geometric discrepancy: 0.1893

The information below is about IL_5AY2_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8J|1|CA|C|1244
4V8J|1|CA|C|1245
4V8J|1|CA|G|1246
*
4V8J|1|CA|C|1251
4V8J|1|CA|G|1252
4V8J|1|CA|G|1253

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CS

30S ribosomal protein S19

Chain CU

30S ribosomal protein THX