IL_4V8J_231

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V8J|1|CA|C|1382, 4V8J|1|CA|A|1480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_231 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1718

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8J|1|CA|C|1381
4V8J|1|CA|C|1382
4V8J|1|CA|G|1383
*
4V8J|1|CA|C|1478
4V8J|1|CA|A|1479
4V8J|1|CA|A|1480
4V8J|1|CA|G|1481

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain CX

messenger RNA