IL_4V8J_233

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_233 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1693

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8J|1|CA|G|1387
4V8J|1|CA|U|1388
4V8J|1|CA|C|1389
*
4V8J|1|CA|G|1471
4V8J|1|CA|U|1472
4V8J|1|CA|C|1473

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CX

messenger RNA

Chain CY

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA