IL_4V8J_286

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V8J|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_286 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V8J|1|DA|C|1208
4V8J|1|DA|G|1209
4V8J|1|DA|A|1210
4V8J|1|DA|U|1211
4V8J|1|DA|G|1212
4V8J|1|DA|A|1213
4V8J|1|DA|A|1214
4V8J|1|DA|G|1215
*
4V8J|1|DA|U|1234
4V8J|1|DA|G|1235
4V8J|1|DA|G|1236
4V8J|1|DA|A|1237
4V8J|1|DA|G|1238

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L20