IL_4V8J_302

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V8J|1|DA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_302 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2917

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8J|1|DA|G|1526
4V8J|1|DA|G|1527
4V8J|1|DA|A|1528
4V8J|1|DA|A|1528|||A
4V8J|1|DA|G|1529
*
4V8J|1|DA|U|1540
4V8J|1|DA|G|1541
4V8J|1|DA|A|1542
4V8J|1|DA|C|1543
4V8J|1|DA|A|1544
4V8J|1|DA|A|1545
4V8J|1|DA|C|1546

Current chains

Chain DA

23S rRNA

Nearby chains