IL_4V8J_358

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCG,CGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_358 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.3965

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8J|1|DB|G|83
4V8J|1|DB|C|84
4V8J|1|DB|G|85
*
4V8J|1|DB|C|92
4V8J|1|DB|G|93
4V8J|1|DB|C|94

Current chains

Chain DB

5S rRNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25