IL_4V8J_378

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAUA*UGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_378 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.3231

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4V8J|1|DA|G|869
4V8J|1|DA|A|870
4V8J|1|DA|U|871
4V8J|1|DA|A|872
*
4V8J|1|DA|U|905
4V8J|1|DA|G|906
4V8J|1|DA|U|907
4V8J|1|DA|C|908

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25