IL_4V8J_381

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_381 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.276

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8J|1|DA|C|2107
4V8J|1|DA|C|2108
4V8J|1|DA|U|2109
4V8J|1|DA|G|2110
*
4V8J|1|DA|C|2179
4V8J|1|DA|U|2180
4V8J|1|DA|G|2181
4V8J|1|DA|G|2182

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L1