IL_4V8J_391

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4V8J|1|CA|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8J_391 not in the Motif Atlas

Homologous match to IL_4LFB_048

Geometric discrepancy: 0.2288

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8J|1|CA|G|1106
4V8J|1|CA|U|1107
4V8J|1|CA|U|1108
4V8J|1|CA|G|1109
4V8J|1|CA|C|1110
*
4V8J|1|CA|G|1125
4V8J|1|CA|G|1126
4V8J|1|CA|C|1127
4V8J|1|CA|A|1128
4V8J|1|CA|C|1129
4V8J|1|CA|U|1130
4V8J|1|CA|C|1131

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10