IL_4V8N_067

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUC,GAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_067 not in the Motif Atlas

Homologous match to IL_5E81_371

Geometric discrepancy: 0.2116

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8N|1|AY|A|29
4V8N|1|AY|U|30
4V8N|1|AY|C|31
*
4V8N|1|AY|G|43
4V8N|1|AY|A|44
4V8N|1|AY|U|45

Current chains

Chain AY

E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AM

30S RIBOSOMAL PROTEIN S13