IL_4V8N_083
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8N_083 not in the Motif Atlas
- Geometric match to IL_5J7L_257
- Geometric discrepancy: 0.0641
- The information below is about IL_5J7L_257
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V8N|1|BA|C|564
4V8N|1|BA|C|565
4V8N|1|BA|U|566
*
4V8N|1|BA|A|575
4V8N|1|BA|U|576
4V8N|1|BA|G|577
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B5
- 50S RIBOSOMAL PROTEIN L32
- Chain BE
- 50S RIBOSOMAL PROTEIN L3
- Chain BF
- 50S RIBOSOMAL PROTEIN L4
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
- Chain BU
- 50S RIBOSOMAL PROTEIN L20
- Chain BV
- 50S RIBOSOMAL PROTEIN L21
Coloring options: