IL_4V8N_209

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V8N|1|CA|A|532, 4V8N|1|CA|U|534, 4V8N|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_209 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1612

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V8N|1|CA|G|515
4V8N|1|CA|U|516
4V8N|1|CA|G|517
4V8N|1|CA|C|518
4V8N|1|CA|C|519
4V8N|1|CA|A|520
4V8N|1|CA|G|521
*
4V8N|1|CA|C|528
4V8N|1|CA|G|529
4V8N|1|CA|G|530
4V8N|1|CA|U|531
4V8N|1|CA|A|532
4V8N|1|CA|A|533
4V8N|1|CA|U|534
4V8N|1|CA|A|535
4V8N|1|CA|C|536

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CX

MRNA

Chain CY

Transfer RNA; tRNA