IL_4V8N_223

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_223 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0678

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8N|1|CA|G|887
4V8N|1|CA|G|888
4V8N|1|CA|A|889
4V8N|1|CA|G|890
4V8N|1|CA|U|891
4V8N|1|CA|A|892
4V8N|1|CA|C|893
4V8N|1|CA|G|894
*
4V8N|1|CA|U|905
4V8N|1|CA|G|906
4V8N|1|CA|A|907
4V8N|1|CA|A|908
4V8N|1|CA|A|909
4V8N|1|CA|C|910

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CQ

30S RIBOSOMAL PROTEIN S17