IL_4V8N_329

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V8N|1|DA|A|1938, 4V8N|1|DA|U|1944, 4V8N|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8N_329 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1036

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V8N|1|DA|C|1934
4V8N|1|DA|G|1935
4V8N|1|DA|A|1936
4V8N|1|DA|A|1937
4V8N|1|DA|A|1938
4V8N|1|DA|U|1939
4V8N|1|DA|U|1940
4V8N|1|DA|C|1941
4V8N|1|DA|C|1942
4V8N|1|DA|U|1943
4V8N|1|DA|U|1944
4V8N|1|DA|G|1945
*
4V8N|1|DA|C|1961
4V8N|1|DA|C|1962
4V8N|1|DA|U|1963
4V8N|1|DA|G|1964

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

Transfer RNA; tRNA

Chain DD

50S RIBOSOMAL PROTEIN L2