IL_4V8O_025

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V8O|1|AA|A|532, 4V8O|1|AA|U|534, 4V8O|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1582

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V8O|1|AA|G|515
4V8O|1|AA|U|516
4V8O|1|AA|G|517
4V8O|1|AA|C|518
4V8O|1|AA|C|519
4V8O|1|AA|A|520
4V8O|1|AA|G|521
*
4V8O|1|AA|C|528
4V8O|1|AA|G|529
4V8O|1|AA|G|530
4V8O|1|AA|U|531
4V8O|1|AA|A|532
4V8O|1|AA|A|533
4V8O|1|AA|U|534
4V8O|1|AA|A|535
4V8O|1|AA|C|536

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AC

30S RIBOSOMAL PROTEIN S3

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12