IL_4V8O_026

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_026 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.1325

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V8O|1|AA|U|580
4V8O|1|AA|G|581
4V8O|1|AA|U|582
4V8O|1|AA|A|583
4V8O|1|AA|G|584
*
4V8O|1|AA|U|757
4V8O|1|AA|G|758
4V8O|1|AA|A|759
4V8O|1|AA|G|760
4V8O|1|AA|G|761

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17