IL_4V8O_167

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCCC*GGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCCC,GGGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8O_167 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2095

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V8O|1|BA|C|2136
4V8O|1|BA|C|2137
4V8O|1|BA|C|2138
4V8O|1|BA|C|2139
*
4V8O|1|BA|G|2152
4V8O|1|BA|G|2153
4V8O|1|BA|G|2154
4V8O|1|BA|G|2155

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S RIBOSOMAL PROTEIN L1