IL_4V8P_001

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

4V8P|1|B2|U|148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.5736

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V8P|1|A1|C|6
4V8P|1|A1|C|7
*
4V8P|1|B2|G|147
4V8P|1|B2|U|148
4V8P|1|B2|G|149

Current chains

Chain A1

26S RRNA

Chain B2

5.8S RRNA

Nearby chains

Chain BF

RPL7A

Chain BL

RIBOSOMAL PROTEIN L15

Chain BR

RPL23A