IL_4V8P_040

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUGAAG*UGGAAGC

Length

13 nucleotides

Bulged bases

4V8P|1|A1|G|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_040 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.2356

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V8P|1|A1|G|858
4V8P|1|A1|U|859
4V8P|1|A1|G|860
4V8P|1|A1|A|861
4V8P|1|A1|A|862
4V8P|1|A1|G|863
*
4V8P|1|A1|U|880
4V8P|1|A1|G|881
4V8P|1|A1|G|882
4V8P|1|A1|A|883
4V8P|1|A1|A|884
4V8P|1|A1|G|885
4V8P|1|A1|C|886

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BA

RPL8

Chain BO

RPL19

Chain BY

RPL37A