IL_4V8P_050
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|A1|G|1027, 4V8P|1|A1|A|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_050 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.1672
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|A1|G|1025
4V8P|1|A1|C|1026
4V8P|1|A1|G|1027
4V8P|1|A1|A|1028
4V8P|1|A1|A|1029
4V8P|1|A1|U|1030
*
4V8P|1|A1|A|1072
4V8P|1|A1|A|1073
4V8P|1|A1|A|1074
4V8P|1|A1|C|1075
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain B3
- 5S ribosomal RNA; 5S rRNA
- Chain BH
- 60S RIBOSOMAL PROTEIN L10
- Chain BM
- 60S RIBOSOMAL PROTEIN L5
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: