IL_4V8P_058
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAUAAG*CGAUAC
- Length
- 12 nucleotides
- Bulged bases
- 4V8P|1|A1|U|1358
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_058 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.1619
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8P|1|A1|G|1193
4V8P|1|A1|A|1194
4V8P|1|A1|U|1195
4V8P|1|A1|A|1196
4V8P|1|A1|A|1197
4V8P|1|A1|G|1198
*
4V8P|1|A1|C|1355
4V8P|1|A1|G|1356
4V8P|1|A1|A|1357
4V8P|1|A1|U|1358
4V8P|1|A1|A|1359
4V8P|1|A1|C|1360
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AH
- RPL35A
- Chain B3
- 5S ribosomal RNA; 5S rRNA
- Chain BN
- RPL18
- Chain BV
- 60S RIBOSOMAL PROTEIN L7
- Chain BX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: