IL_4V8P_062
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAUACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4V8P|1|A1|U|1223, 4V8P|1|A1|A|1329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_062 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1761
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|A1|G|1221
4V8P|1|A1|A|1222
4V8P|1|A1|U|1223
4V8P|1|A1|A|1224
4V8P|1|A1|C|1225
4V8P|1|A1|C|1226
4V8P|1|A1|A|1227
4V8P|1|A1|C|1228
4V8P|1|A1|A|1229
4V8P|1|A1|A|1230
4V8P|1|A1|A|1231
4V8P|1|A1|A|1232
*
4V8P|1|A1|U|1326
4V8P|1|A1|G|1327
4V8P|1|A1|A|1328
4V8P|1|A1|A|1329
4V8P|1|A1|A|1330
4V8P|1|A1|A|1331
4V8P|1|A1|U|1332
4V8P|1|A1|G|1333
4V8P|1|A1|G|1334
4V8P|1|A1|A|1335
4V8P|1|A1|U|1336
4V8P|1|A1|G|1337
4V8P|1|A1|G|1338
4V8P|1|A1|C|1339
4V8P|1|A1|G|1340
4V8P|1|A1|C|1341
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AH
- RPL35A
- Chain AK
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
- Chain B3
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BH
- 60S RIBOSOMAL PROTEIN L10
- Chain BI
- 60S RIBOSOMAL PROTEIN L13A
- Chain BV
- 60S RIBOSOMAL PROTEIN L7
Coloring options: