IL_4V8P_078
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUAAC*GGCAGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_078 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.1827
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|A1|U|1718
4V8P|1|A1|U|1719
4V8P|1|A1|A|1720
4V8P|1|A1|A|1721
4V8P|1|A1|C|1722
*
4V8P|1|A1|G|1772
4V8P|1|A1|G|1773
4V8P|1|A1|C|1774
4V8P|1|A1|A|1775
4V8P|1|A1|G|1776
4V8P|1|A1|A|1777
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AL
- RPL34
- Chain AP
- RPL38
- Chain BO
- RPL19
Coloring options: